Search results for "Potential energy surface"

showing 10 items of 82 documents

The transition state and cognate concepts

2019

Abstract This review aims firstly to clarify the meanings of key terms and concepts associated with the idea of the transition state, as developed by theoreticians and applied by experimentalist, and secondly to provide an update to the meaning and significance of the transition state in an era when computational simulation, in which complexity is being increasingly incorporated, is commonly employed as a means by which to bridge the realms of theory and experiment. The relationship between the transition state and the potential-energy surface for an elementary reaction is explored, with discussion of the following terms: saddle point, minimum-energy reaction path, reaction coordinate, acti…

/dk/atira/pure/subjectarea/asjc/1600/1606Structure (mathematical logic)Potential-energy surface/dk/atira/pure/subjectarea/asjc/1600/1605Computer scienceActivated complexOrganic ChemistryReaction coordinateTransition stateDividing surfaceEquicommittorState (functional analysis)Reaction coordinateFree-energy surfaceSimple (abstract algebra)Saddle pointElementary reactionPotential energy surfaceComputational simulationStatistical physicsPhysical and Theoretical Chemistry
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Theoretical investigation of the potential energy surface of the van der Waals complex CH4-N-2

2009

International audience; The interaction potential energy surface of the van der Waals CH4-N-2 complex has been calculated for a broad range of intermolecular separations and configurations in the approximation of rigid interacting molecules at the CCSD(T) and MP2 levels of theory using the correlation consistent aug-cc-pVTZ basis set. The BSSE correction was taken into account for all the calculations. The most stable configurations of the complex were found. Binding energies were calculated in the CBS limit with accounting for the molecular deformations. The harmonic and anharmonic fundamental vibrational frequencies and rotational constants for the ground and first excited vibrational sta…

010304 chemical physicsChemistryBinding energyIntermolecular forceAnharmonicityVan der Waals surfaceGeneral Physics and Astronomy010402 general chemistry01 natural sciences0104 chemical sciences[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry[CHIM.THEO] Chemical Sciences/Theoretical and/or physical chemistrysymbols.namesakeLennard-Jones potentialExcited state0103 physical sciencesPotential energy surface[ CHIM.THEO ] Chemical Sciences/Theoretical and/or physical chemistrysymbolsPhysics::Atomic and Molecular ClustersPhysical and Theoretical Chemistryvan der Waals forceAtomic physicsPhysics::Chemical Physics
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Full-dimensional control of the radiationless decay in pyrazine using the dynamic Stark effect

2014

We present a full quantum-mechanical study of the laser control of the radiationless decay between the B3u(nπ(*)) and B2u(ππ(*)) states of pyrazine using the dynamic Stark effect. In contrast to our previous study [Sala et al., J. Chem. Phys. 140, 194309 (2014)], where a four-dimensional model was used, all the 24 degrees of freedom are now included in order to test the robustness of the strategy of control. Using a vibronic coupling Hamiltonian model in a diabatic representation, the multi-layer version of the multi-configuration time-dependent Hartree method is exploited to propagate the corresponding wave packets. We still observe a trapping of the wavepacket on the B2u(ππ(*)) potential …

010304 chemical physicsChemistryWave packetDiabaticGeneral Physics and AstronomyHartree010402 general chemistry01 natural sciencesPotential energy0104 chemical sciences[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistryVibronic couplingsymbols.namesakeStark effectQuantum mechanicsExcited state[ CHIM.THEO ] Chemical Sciences/Theoretical and/or physical chemistry0103 physical sciencesPotential energy surfacesymbolsPhysics::Atomic PhysicsPhysics::Chemical PhysicsPhysical and Theoretical ChemistryAtomic physicsComputingMilieux_MISCELLANEOUSThe Journal of Chemical Physics
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Germanium Dicarbide: Evidence for a T-Shaped Ground State Structure

2017

The equilibrium structure of germanium dicarbide GeC2 has been an open question since the late 1950s. Although most high-level quantum calculations predict an L-shaped geometry, a T-shaped or even a linear geometry cannot be ruled out because of the very flat potential energy surface. By recording the rotational spectrum of this dicarbide using sensitive microwave and millimeter techniques, we unambiguously establish that GeC2 adopts a vibrationally averaged T-shaped structure in its ground state. From analysis of 14 isotopologues, a precise r0 structure has been derived, yielding a Ge–C bond length of 1.952(1) A and an apex angle of 38.7(2)°.

010304 chemical physicsChemistrychemistry.chemical_elementLinear molecular geometryGermanium02 engineering and technology021001 nanoscience & nanotechnology01 natural sciencesMolecular physicsBond lengthCrystallography0103 physical sciencesPotential energy surfaceGeneral Materials ScienceMillimeterIsotopologuePhysical and Theoretical Chemistry0210 nano-technologyGround stateMicrowaveThe Journal of Physical Chemistry Letters
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High excitations in coupled-cluster series: vibrational energy levels of ammonia

2004

The ammonia molecule containing large amplitude inversion motion is a revealing system in examining high-order correlation effects on potential energy surfaces. Correlation contributions to the equilibrium and saddle point geometries, inversion barrier height and vibrational energy levels, including inversion splittings, have been investigated. A six-dimensional Taylor-type series expansion of the Born–Oppenheimer potential energy surface, which is scaled to different levels of theory, is used to determine vibrational energy levels and inversion splittings variationally. The electronic energies are calculated by coupled-cluster methods, combining explicitly correlated R12 theory (which incl…

010304 chemical physicsElectronic correlationChemistryBiophysics010402 general chemistryCondensed Matter Physics01 natural sciencesPotential energyFull configuration interaction0104 chemical sciencesCoupled clusterSaddle point0103 physical sciencesPotential energy surfacePhysical and Theoretical ChemistryAtomic physicsWave functionSeries expansionMolecular BiologyMolecular Physics
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PdII-mediated integration of isocyanides and azide ions might proceed via formal 1,3-dipolar cycloaddition between RNC ligands and uncomplexed azide

2016

Reaction between equimolar amounts of trans-[PdCl(PPh3)2(CNR)][BF4] (R = t-Bu 1, Xyl 2) and diisopropylammonium azide 3 gives the tetrazolate trans-[PdCl(PPh3)2(N4t-Bu)] (67%, 4) or trans-[PdCl(PPh3)2(N4Xyl)] (72%, 5) complexes. 4 and 5 were characterized by elemental analyses (C, H, N), HRESI+-MS, 1H and 13C{1H} NMR spectroscopies. In addition, the structure of 4 was elucidated by a single-crystal X-ray diffraction. DFT calculations showed that the mechanism for the formal cycloaddition (CA) of N3− to trans-[PdCl(PH3)2(CNMe)]+ is stepwise. The process is both kinetically and thermodynamically favorable and occurs via the formation of an acyclic NNNCN-intermediate. The second step of the fo…

010405 organic chemistryLigandStereochemistryIsocyanidechemistry.chemical_elementGeneral Chemistrypalladium complexes010402 general chemistry01 natural sciencesMedicinal chemistryCatalysisCycloadditionazides0104 chemical sciencesIonchemistry.chemical_compoundisocyanideschemistry13-Dipolar cycloadditionPotential energy surfaceMaterials ChemistryAzideta116PalladiumNew Journal of Chemistry
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A DFT study on the chiral synthesis of R-phenylacetyl carbinol within the quantum chemical cluster approach

2017

Abstract The reaction pathway leading to R-phenylacetyl carbinol within the quantum chemical cluster approach is addressed by means of density functional theory (DFT) calculations. The study includes calculation of Fukui functions, activation free energies, and potential energy surface scans, both in gas and solution phase. The protonation states of the nitrogen atoms of the pyrimidine moiety are determined. The reaction appears to be slightly exergonic (ΔG 0  = −5.6 and −4.0 kcal/mol for gas and solution phase, respectively) following a concerted synchronous mechanism having activation free energy barriers of 16.2 and 13.3 kcal/mol, in gas phase and solution phase, respectively.

0301 basic medicineExergonic reaction030102 biochemistry & molecular biologyPyrimidineEnantioselective synthesisGeneral Physics and AstronomyProtonation03 medical and health scienceschemistry.chemical_compound030104 developmental biologychemistryComputational chemistryPotential energy surfaceCluster (physics)MoietyDensity functional theoryPhysical and Theoretical ChemistryChemical Physics Letters
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Low temperature rate coefficients of the H + CH+ → C+ + H2 reaction: New potential energy surface and time-independent quantum scattering

2015

The observed abundances of the methylidyne cation, CH(+), in diffuse molecular clouds can be two orders of magnitude higher than the prediction of the standard gas-phase models which, in turn, predict rather well the abundances of neutral CH. It is therefore necessary to investigate all the possible formation and destruction processes of CH(+) in the interstellar medium with the most abundant species H, H2, and e(-). In this work, we address the destruction process of CH(+) by hydrogen abstraction. We report a new calculation of the low temperature rate coefficients for the abstraction reaction, using accurate time-independent quantum scattering and a new high-level ab initio global potenti…

Ab initio quantum chemistry methodsChemistryScatteringPotential energy surfaceThermochemistryAb initioGeneral Physics and AstronomyThermodynamicsReactivity (chemistry)Scattering theoryPhysical and Theoretical ChemistryAtomic physicsPotential energyThe Journal of Chemical Physics
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Theoretical study of the NH tautomerism in free base porphyrin

1997

Abstract The NH tautomerism of free base porphyrin is investigated at the semiempirical spin-unrestricted AM1 (UAM1) and ab initio RHF/3-21G levels. The UAM1 method provides delocalized geometries for all stationary structures without imposing any symmetry constraint. RHF/3-21G geometry optimizations have to be performed under symmetry restrictions to ensure that realistic delocalized structures are obtained. Both the semiempirical and the ab initio calculations predict that the interconversion between trans tautomers proceeds in an asynchronous two-step process via intermediate cis tautomers. The cis tautomers are characterized as minima in the potential energy surface and are 8–10 kcal m…

Ab initioFree baseActivation energyCondensed Matter PhysicsBiochemistryPorphyrinTautomerchemistry.chemical_compoundDelocalized electronchemistryComputational chemistryAb initio quantum chemistry methodsPotential energy surfacePhysical and Theoretical ChemistryJournal of Molecular Structure: THEOCHEM
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Ab Initio Study on the Mechanism of the Reactions of the Nitrate Radical with Haloalkenes:  1,2-Dichloroethene, 1,1-Dichloroethene, Trichloroethene, …

2000

A general mechanism for the reactions of the NO3 radical with 1,2-dichloroethene, 1,1-dichloroethene, trichloroethene, and tetrachloroethene is proposed from ab initio DFT calculations. The calculated mechanism shows three main parallel reaction pathways. For the systems where the two carbon atoms are differently substituted, the study includes both the attacks with Markownikoff and contra-Markownikoff orientation. The first reaction pathway leads to the formation of an epoxide along with the NO2 radical, the second one to the formation of carbonyl compounds, and the third one leads, through the cleavage of the C−C bond, to the formation of carbonyl compounds with a lower number of carbon a…

Ab initiochemistry.chemical_elementEpoxidePhotochemistry12-Dichloroethene11-Dichloroethenechemistry.chemical_compoundchemistryComputational chemistryPotential energy surfaceDensity functional theoryPhysical and Theoretical ChemistryCarbonBasis setThe Journal of Physical Chemistry A
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